CDS

Accession Number TCMCG057C50497
gbkey CDS
Protein Id XP_018456490.1
Location join(28233219..28234522,28234680..28234737,28234908..28235030,28235159..28235216,28235304..28235440,28235706..28235867,28235986..28236072,28236232..28236414,28236704..28236856,28236947..28237129,28237226..28237291,28237395..28237490,28237852..28237938,28238020..28238136,28238231..28238441,28238562..28238626,28238849..28238907,28238995..28239126,28239200..28239359,28239436..28239771,28239883..28239939,28240052..28240150,28240242..28240337,28240427..28240617,28240879..28241050)
Gene LOC108827565
GeneID 108827565
Organism Raphanus sativus

Protein

Length 1463aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA344915
db_source XM_018600988.1
Definition PREDICTED: lysine-specific demethylase 5C isoform X1 [Raphanus sativus]

EGGNOG-MAPPER Annotation

COG_category C
Description lysine-specific demethylase
KEGG_TC -
KEGG_Module -
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko01000        [VIEW IN KEGG]
ko01009        [VIEW IN KEGG]
ko03036        [VIEW IN KEGG]
KEGG_ko ko:K11446        [VIEW IN KEGG]
EC -
KEGG_Pathway -
GOs GO:0000122        [VIEW IN EMBL-EBI]
GO:0000976        [VIEW IN EMBL-EBI]
GO:0001046        [VIEW IN EMBL-EBI]
GO:0001047        [VIEW IN EMBL-EBI]
GO:0001067        [VIEW IN EMBL-EBI]
GO:0003674        [VIEW IN EMBL-EBI]
GO:0003676        [VIEW IN EMBL-EBI]
GO:0003677        [VIEW IN EMBL-EBI]
GO:0003682        [VIEW IN EMBL-EBI]
GO:0003690        [VIEW IN EMBL-EBI]
GO:0003700        [VIEW IN EMBL-EBI]
GO:0003712        [VIEW IN EMBL-EBI]
GO:0003713        [VIEW IN EMBL-EBI]
GO:0003824        [VIEW IN EMBL-EBI]
GO:0005488        [VIEW IN EMBL-EBI]
GO:0005515        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005634        [VIEW IN EMBL-EBI]
GO:0006325        [VIEW IN EMBL-EBI]
GO:0006355        [VIEW IN EMBL-EBI]
GO:0006357        [VIEW IN EMBL-EBI]
GO:0006464        [VIEW IN EMBL-EBI]
GO:0006482        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0006996        [VIEW IN EMBL-EBI]
GO:0007623        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0008214        [VIEW IN EMBL-EBI]
GO:0008270        [VIEW IN EMBL-EBI]
GO:0009889        [VIEW IN EMBL-EBI]
GO:0009890        [VIEW IN EMBL-EBI]
GO:0009891        [VIEW IN EMBL-EBI]
GO:0009892        [VIEW IN EMBL-EBI]
GO:0009893        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0010468        [VIEW IN EMBL-EBI]
GO:0010556        [VIEW IN EMBL-EBI]
GO:0010557        [VIEW IN EMBL-EBI]
GO:0010558        [VIEW IN EMBL-EBI]
GO:0010604        [VIEW IN EMBL-EBI]
GO:0010605        [VIEW IN EMBL-EBI]
GO:0010628        [VIEW IN EMBL-EBI]
GO:0010629        [VIEW IN EMBL-EBI]
GO:0010639        [VIEW IN EMBL-EBI]
GO:0016043        [VIEW IN EMBL-EBI]
GO:0016569        [VIEW IN EMBL-EBI]
GO:0016570        [VIEW IN EMBL-EBI]
GO:0016577        [VIEW IN EMBL-EBI]
GO:0019219        [VIEW IN EMBL-EBI]
GO:0019222        [VIEW IN EMBL-EBI]
GO:0019538        [VIEW IN EMBL-EBI]
GO:0031056        [VIEW IN EMBL-EBI]
GO:0031057        [VIEW IN EMBL-EBI]
GO:0031063        [VIEW IN EMBL-EBI]
GO:0031064        [VIEW IN EMBL-EBI]
GO:0031323        [VIEW IN EMBL-EBI]
GO:0031324        [VIEW IN EMBL-EBI]
GO:0031325        [VIEW IN EMBL-EBI]
GO:0031326        [VIEW IN EMBL-EBI]
GO:0031327        [VIEW IN EMBL-EBI]
GO:0031328        [VIEW IN EMBL-EBI]
GO:0031399        [VIEW IN EMBL-EBI]
GO:0031400        [VIEW IN EMBL-EBI]
GO:0031490        [VIEW IN EMBL-EBI]
GO:0032268        [VIEW IN EMBL-EBI]
GO:0032269        [VIEW IN EMBL-EBI]
GO:0032451        [VIEW IN EMBL-EBI]
GO:0032452        [VIEW IN EMBL-EBI]
GO:0032453        [VIEW IN EMBL-EBI]
GO:0032501        [VIEW IN EMBL-EBI]
GO:0032922        [VIEW IN EMBL-EBI]
GO:0032991        [VIEW IN EMBL-EBI]
GO:0032993        [VIEW IN EMBL-EBI]
GO:0033043        [VIEW IN EMBL-EBI]
GO:0033044        [VIEW IN EMBL-EBI]
GO:0034647        [VIEW IN EMBL-EBI]
GO:0034648        [VIEW IN EMBL-EBI]
GO:0034720        [VIEW IN EMBL-EBI]
GO:0034721        [VIEW IN EMBL-EBI]
GO:0035064        [VIEW IN EMBL-EBI]
GO:0036211        [VIEW IN EMBL-EBI]
GO:0042393        [VIEW IN EMBL-EBI]
GO:0043086        [VIEW IN EMBL-EBI]
GO:0043167        [VIEW IN EMBL-EBI]
GO:0043169        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0043412        [VIEW IN EMBL-EBI]
GO:0043565        [VIEW IN EMBL-EBI]
GO:0044092        [VIEW IN EMBL-EBI]
GO:0044212        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044260        [VIEW IN EMBL-EBI]
GO:0044267        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0045892        [VIEW IN EMBL-EBI]
GO:0045893        [VIEW IN EMBL-EBI]
GO:0045934        [VIEW IN EMBL-EBI]
GO:0045935        [VIEW IN EMBL-EBI]
GO:0046872        [VIEW IN EMBL-EBI]
GO:0046914        [VIEW IN EMBL-EBI]
GO:0048511        [VIEW IN EMBL-EBI]
GO:0048518        [VIEW IN EMBL-EBI]
GO:0048519        [VIEW IN EMBL-EBI]
GO:0048522        [VIEW IN EMBL-EBI]
GO:0048523        [VIEW IN EMBL-EBI]
GO:0050789        [VIEW IN EMBL-EBI]
GO:0050790        [VIEW IN EMBL-EBI]
GO:0050794        [VIEW IN EMBL-EBI]
GO:0051090        [VIEW IN EMBL-EBI]
GO:0051128        [VIEW IN EMBL-EBI]
GO:0051129        [VIEW IN EMBL-EBI]
GO:0051171        [VIEW IN EMBL-EBI]
GO:0051172        [VIEW IN EMBL-EBI]
GO:0051173        [VIEW IN EMBL-EBI]
GO:0051246        [VIEW IN EMBL-EBI]
GO:0051248        [VIEW IN EMBL-EBI]
GO:0051252        [VIEW IN EMBL-EBI]
GO:0051253        [VIEW IN EMBL-EBI]
GO:0051254        [VIEW IN EMBL-EBI]
GO:0051276        [VIEW IN EMBL-EBI]
GO:0051336        [VIEW IN EMBL-EBI]
GO:0051346        [VIEW IN EMBL-EBI]
GO:0060255        [VIEW IN EMBL-EBI]
GO:0065007        [VIEW IN EMBL-EBI]
GO:0065009        [VIEW IN EMBL-EBI]
GO:0070076        [VIEW IN EMBL-EBI]
GO:0070988        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0071840        [VIEW IN EMBL-EBI]
GO:0080090        [VIEW IN EMBL-EBI]
GO:0090311        [VIEW IN EMBL-EBI]
GO:0097159        [VIEW IN EMBL-EBI]
GO:0140030        [VIEW IN EMBL-EBI]
GO:0140034        [VIEW IN EMBL-EBI]
GO:0140096        [VIEW IN EMBL-EBI]
GO:0140110        [VIEW IN EMBL-EBI]
GO:1901363        [VIEW IN EMBL-EBI]
GO:1901564        [VIEW IN EMBL-EBI]
GO:1901725        [VIEW IN EMBL-EBI]
GO:1901726        [VIEW IN EMBL-EBI]
GO:1902275        [VIEW IN EMBL-EBI]
GO:1902679        [VIEW IN EMBL-EBI]
GO:1902680        [VIEW IN EMBL-EBI]
GO:1903506        [VIEW IN EMBL-EBI]
GO:1903507        [VIEW IN EMBL-EBI]
GO:1903508        [VIEW IN EMBL-EBI]
GO:1905268        [VIEW IN EMBL-EBI]
GO:1990837        [VIEW IN EMBL-EBI]
GO:2000112        [VIEW IN EMBL-EBI]
GO:2000113        [VIEW IN EMBL-EBI]
GO:2001141        [VIEW IN EMBL-EBI]
GO:2001251        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGGGAAAAGGTAGAGCTAAGGCAGTAGAGAAAAGGGTTTTAGATCAGAAGCTGAGAGGATCGGTCAATGTCCCGTCTGGACCTGTTTATTACCCGACCGAAGACGAATTCAAAAACCCTCTAGATTACATACACAAGATCAAGCCAGAGGCAGAGGCTTACGGGATCTGCAAGATTGTTCCACCGAAAAGCTGGAAACCGCCTTTCGGTTTGGACATGGAGTCTGTCAGGTTTCCGACAAAGACGCAGGAGATTCACCGGTTGCAGTTCCGTCCCGCTTCTTGCAACTCCAAGACGTTTCAGCTGGAGTACGGGAGGTTTGTGGAGGAGCAGTTAGGGAAGAAGGTGAAGAAGAAGAAGAGGGTGGTGTTCGAAGGGGGTGATTTGGATCTGTGTAAGGTGTTTAATGCGGTGAAGAGGTTTGGGGGTTATGATAAGGTTGTCAAGGGGAAGAAATGGGGTGAGGTTTATCAGTTTATGAGCTCTGGTGAGAAGATCTCCAAGTGTGCTAAGCATGTTTTGTGTCAGTTGTATAAAGAGCATTTGTATGAGTTTGAGAAGTATCACGGGATGATGAGTGCGGATCCTTCTGCAAAGGGTCACAAAAGGAATCGACGGTGTTCTGAGCTCTCTAGCTCGAAGAGAAGGAAAAGAAATGCTGACGTGAAAAATCATAAGGTGGAAAGTGAAGAAGAAGAGGTTGATCAGGCATGTGAGCAGTGCAAAAGTGACAAACATGGTGAAGTGATGCTCTTGTGTGATAGTTGTAATAAAGGTTGGCATATATACTGTCTCTCGCCGCCGTTGAAGCATATCCCGCCTGGGAACTGGTATTGCCTTGATTGCTTAAACACTGATGAAGACACTTTTGGGTTTGTGCCCGGTAAATGCTTGTTACTTGAAGATTTCAAGCGCATTGCTGATCGCGCCAAAAGGAAGTGGTTTGGTTCAGGGCCGGTGTCTAGGACGCAGATTGAGAAGAAGTTTTGGGAAATAGTAGAAGGGTCAGGTGGTGACGTTGAAGTTATGTATGGTAATGACTTGGATACTTCTGTTTACGGGAGTGGTTTTCCTAGAATAGGTGATAGAAGACCAGAATCAGTTGAGGCAAATGTTTGGGATGAATATTGCCATAGCCCTTGGAATCTCAATAACATGCCTAAGTTGAAAGGATCTATGCTTCAGGCCATTCGGCATAACATCAATGGTGTTACAGTGCCTTGGCTATATCTTGGAATGCTCTTCTCTGCTTTTTGTTGGCATTTTGAGGACCATTGTTTTTACTCTGTGAATTATCACCACTGGGGAGAAGCAAAATGTTGGTATGGTGTTCCAGGCAGTGCTGCTAGTGCTTTTGAAAAGGTCATGCGAAAAGCCCTACCTGATCTCTTTGATGCTCAGCCAGATTTGCTCTTTCAACTGGTTACTATGTTGAGTCCGGCTGTTTTGCAAGAAAATAAAGTCCCTGTGTACACAGTATTACAGGAGCCTGGAAACTTTGTGATCACGTTTCCAAAATCCTTTCATGCTGGATTCAATTTCGGTTTGAATTGTGCAGAGGCCGTCAATTTTGCCACTGCCGATTGGCTACCTTATGGTGGTTATGGTGCGGAGCTGTATAGGCTGTACCGTAAACCTGCAGTCATATCTCATGAAGAGCTTCTCTGTGTGGTAGCTAAGGGAAACAGCTGCGATGGCAAAGGATCAATATATTTGAAGAAAGAACTGCTCAGAATATATAGCAAGGAAAAAACTTTGAGAGAGCAGCTTTGGAAAAGTGGTATTTTGAGATCCTCTCCTATGTTTCTACCTGAATGCCCTGATTCTGTGGGCATCGAAGAGGATACAACATGCATCATCTGCCAGCAGTTTCTCCATCTTTCTGCTATCGTCTGCAGCTGCAGGCCATCTGTTTTTGCATGCTTGGAGCACTGGAAGCACCTTTGTGAATGTGAACCTACAAAACTGCGCCTGGTATATCGGTATACCCTTGCCGAGTTGCATGGAATGGTACAAGAAGTTGAAAAGTTTGGTGACTGCAAAACTCAAGAAACCAAAAATTCACAACGGCCGAGTTCAGGCACCAAACGGTCAGGTGCTTCTAACAAAAAGCAGGAGGGGATGCAAGTTTGCCAGGCACGACCAGCTGAAGATTGGCTTCGTCGAGCATCAAAGGTTCTCCAGGATGTCTTTTCCAGTGATGTATATGCCACTCTTTTAAAGGAAGCAGAACAGTTTCTTTGGGGTGGATCAGAAATGAACCGCGTACGGGATGTTGCAAAAAGTTTGATCAAAGCAAAGATATGGGCTGAAGCTGTTGGCGACTGTCTTTCAAAAGTCGAAGGCAAAGGCAACAATGATACAGAGAAAGTTCACTTGGAGTTCATCGATGAGTTGCTGAAAGTTGACCCCGTTCCTTGCTTTCAGTCTGGTTATCTTAAATTAAAGGACTTTGCTGAAGAGGCTAGGAAGTTGTCTGAGAAAATCGATTGTTCTCTGTCAAGTAGCCCAACGATCGCCCAGATGGAGCTATTGCATTCCGAAGTTTCCAGTTCACCAGTCTCCCTAAGTAAACACAAGATCTTGTCAAAGAAAATATCTTCCGCGAAGATGTTAGCTAAAAGGGCGAGATGCTATCTTGCCGCTTCAAAACCTCCTGGAATTGAGTTGGATGAACTTTTCAAGCTAAAGTCAGAGATATTGGAGCTTCAGGTGACGCTTACAGAAACAGAAGGGATCCTGGATTTGCTAAAGAAATCAGAACTAGCCCGTGATAAATGTAGCAAAGTTTTGAGTGGTTTTATATCTCTCAAGAATGTAGAAGATTTGGTTCATGAATTCGATGGCCTTTGTAGCATTAACATTCGTGAGCTGAATATCCTGAGGCAGTACCATGTTGATGCTTTGTCTTGGATTTCACGCTTTGATGATACAATGGCTGATGTTCGTGAAGGCAAGGACCAACGAAAGCTAATCAGTGACCTGAGTTCCCTTCTCCAGGATGGAGCATCCTTAGGCATTCAAGTTGAAGGGCTCCCTCTTGTTGAGGTTGAATTGAAGAAGGCATCTTGTCGTGAAAAAGCACAAACGGTTTATGCTGCAAGATCGTCTCTGGATTTCATTGAGCAGCTGCTCTCGGAAGCTGTTGTACTACAAATCGAAGAGGAGAAGCTGTTTGTTGAGATCGCCGGAACTTTGTCTACAGCGAGGTTTTGGGAGGAAAGAGCAAGCAGTATTCTTGCCAGTGAAACTCAGATGTCCGACCTTAAAGAACTCGTACAGATGTCTGTCAACATTGGTGCCGTTTTACCCTCTCTGAAAGGCATAGAGAACACCATTTCGTTGGCTGAAACTTGGCTTCAGAATTCTGAGCCCTTTTTATCTGCCGTTTCCTCTACTGCCTCATCTCCGTGTTCTCTGCTTGAACTTCCTGTGTTAAAGGACCTGGTTGCTCAGTCTAAATCGCTTGGTGTTCAACTTGAAGAGCCAAGGATTCTTGAAACATTACTGCTTAGTTGCGAGAGGTGGCAGTGTGATAATCACCCGCTCTTGCAAGAAACTGAAGATTTGTTGGACACTGCGAAAACAGATGATGGCAAGCATAGCACGATTCTTCCGAAGATTATGGACTTGATAACCAGAGTGGACTGCGCCAGAACATCTGGTCTGTCCCTTGGTCTTAATTTGGAAGAACTTCCCAAACTTCAAACGGCAAGTTTAAAACTAGGATGGTGTTATAAGACCATCTTGTTAGGCTCTAGTTCACCTTCCCCTGAGATACCAGAAGATCTAGGAAAGCCCTCGTTACAGAAAATTCAGCAGCACTTAGAAGCGGGACAAACACTGAAAATATTACCTGAAGAGTATCACTTAGGCAAGAGACTTGTGGAGCTAAAAGACACTGGACAAGAGTGGGCAAAACGAGCTAGAAAAGTGGTGACAGACTCGGGTGCTCTTGCCTTGGAAGATGTATTCGAGCTTATCTCTGAGGGTGAAAATTTGCCCGTCATTGCAGAGGAAGAACTTCAGGCATTACGAGCTCGAAGTATGTTGCACTGCGTTTGCCTGAAGCCATACAACTCAAGATTCATGGTTTCTTGTAGTCAATGTGGCGAATGGTATCACACCTATTGTGTTAAACTTCACTGGCGGCCTGAGGCTTATGTCTGCTTCGCTTGCTGTCCTCCGGCAGAATCCTCTCCAAAAAACGATCCCTCCAGATCAATGGAGCCAAAGACACCGTCACTTGACCATAGACGGGCAAGGAGGGTAGTGACCGGTGCAGCAGTTGGTGATTTGCAGTGGAAAAGCCGTAAACGCATCAAAAGGGTAGCTAAACGGTGTCTTCAGGTTCATATCCTTCCCTGGTTTTTCACTCGAGAACCAAAATAA
Protein:  
MGKGRAKAVEKRVLDQKLRGSVNVPSGPVYYPTEDEFKNPLDYIHKIKPEAEAYGICKIVPPKSWKPPFGLDMESVRFPTKTQEIHRLQFRPASCNSKTFQLEYGRFVEEQLGKKVKKKKRVVFEGGDLDLCKVFNAVKRFGGYDKVVKGKKWGEVYQFMSSGEKISKCAKHVLCQLYKEHLYEFEKYHGMMSADPSAKGHKRNRRCSELSSSKRRKRNADVKNHKVESEEEEVDQACEQCKSDKHGEVMLLCDSCNKGWHIYCLSPPLKHIPPGNWYCLDCLNTDEDTFGFVPGKCLLLEDFKRIADRAKRKWFGSGPVSRTQIEKKFWEIVEGSGGDVEVMYGNDLDTSVYGSGFPRIGDRRPESVEANVWDEYCHSPWNLNNMPKLKGSMLQAIRHNINGVTVPWLYLGMLFSAFCWHFEDHCFYSVNYHHWGEAKCWYGVPGSAASAFEKVMRKALPDLFDAQPDLLFQLVTMLSPAVLQENKVPVYTVLQEPGNFVITFPKSFHAGFNFGLNCAEAVNFATADWLPYGGYGAELYRLYRKPAVISHEELLCVVAKGNSCDGKGSIYLKKELLRIYSKEKTLREQLWKSGILRSSPMFLPECPDSVGIEEDTTCIICQQFLHLSAIVCSCRPSVFACLEHWKHLCECEPTKLRLVYRYTLAELHGMVQEVEKFGDCKTQETKNSQRPSSGTKRSGASNKKQEGMQVCQARPAEDWLRRASKVLQDVFSSDVYATLLKEAEQFLWGGSEMNRVRDVAKSLIKAKIWAEAVGDCLSKVEGKGNNDTEKVHLEFIDELLKVDPVPCFQSGYLKLKDFAEEARKLSEKIDCSLSSSPTIAQMELLHSEVSSSPVSLSKHKILSKKISSAKMLAKRARCYLAASKPPGIELDELFKLKSEILELQVTLTETEGILDLLKKSELARDKCSKVLSGFISLKNVEDLVHEFDGLCSINIRELNILRQYHVDALSWISRFDDTMADVREGKDQRKLISDLSSLLQDGASLGIQVEGLPLVEVELKKASCREKAQTVYAARSSLDFIEQLLSEAVVLQIEEEKLFVEIAGTLSTARFWEERASSILASETQMSDLKELVQMSVNIGAVLPSLKGIENTISLAETWLQNSEPFLSAVSSTASSPCSLLELPVLKDLVAQSKSLGVQLEEPRILETLLLSCERWQCDNHPLLQETEDLLDTAKTDDGKHSTILPKIMDLITRVDCARTSGLSLGLNLEELPKLQTASLKLGWCYKTILLGSSSPSPEIPEDLGKPSLQKIQQHLEAGQTLKILPEEYHLGKRLVELKDTGQEWAKRARKVVTDSGALALEDVFELISEGENLPVIAEEELQALRARSMLHCVCLKPYNSRFMVSCSQCGEWYHTYCVKLHWRPEAYVCFACCPPAESSPKNDPSRSMEPKTPSLDHRRARRVVTGAAVGDLQWKSRKRIKRVAKRCLQVHILPWFFTREPK